Abbreviation (ISO4): Acta Academiae Medicinae Sinicae
Editor in chief: Xuetao CAO
Acta Academiae Medicinae Sinicae >
Current Progress of 5-Methylcytosine RNA Methylation in Non-Neoplastic Kidney Diseases
Received date: 2024-02-28
Online published: 2025-03-12
RNA methylation is a key process in the epigenetic regulation of post-transcriptional gene expression.5-Methylcytosine(m5C)is a type of RNA methylation,commonly existing in eukaryotic mRNA and non-coding RNAs.It mainly regulates transfer RNA stability,ribosomal RNA assembly,and mRNA translation,stability,and translation.RNA methylation is dynamically reversible and regulated by methyltransferase,demethylase,and methylation recognition protein.It has been confirmed that aberrant m5C RNA methylation is involved in the pathogenesis of non-neoplastic kidney diseases.This article summarizes the current progress of m5C RNA methylation associated with non-neoplastic acute and chronic kidney diseases,aiming to provide potential targets for the diagnosis and treatment of such diseases.
Key words: epigenetics; RNA methylation; RNA; 5-methylcytosine; kidney diseases
ZHANG Chen , ZHAO Zixia , WU Si , LUAN Junjun , ZHOU Hua . Current Progress of 5-Methylcytosine RNA Methylation in Non-Neoplastic Kidney Diseases[J]. Acta Academiae Medicinae Sinicae, 2025 , 47(1) : 86 -94 . DOI: 10.3881/j.issn.1000-503X.16053
表1 m5C RNA甲基化相关酶及其作用机制 |
分类 | 酶 | 靶RNA | 作用机制 | 参考文献 |
---|---|---|---|---|
编码器 | NSUN1 | 28S rRNA | 调节pre-rRNA加工,维持核仁小核糖核蛋白复合物的稳定性 | [23] |
NSUN2 | mRNA | 调节ALYREF的核胞质穿梭、ALYREF与mRNA结合力和mRNA核输出 | [11] | |
促进mRNA翻译,包括通过YBX1促进mRNA翻译 | [17,24] | |||
通过YBX1维持mRNA稳定性 | [19] | |||
降低mRNA稳定性 | [25] | |||
tRNA | 增加tRNA稳定性和总体蛋白质合成率 | [8,26] | ||
mt-tRNA、miRNA和lncRNA | 机制不清 | [27] | ||
NSUN3 | mt-tRNAMet | 促进线粒体翻译,维持线粒体功能 | [28] | |
NSUN4 | 12S rRNA | 促进线粒体核糖体组装,在线粒体核糖体生物发生中发挥作用 | [29] | |
mRNA | NSUN4与Mettl3形成复合物,通过募集YTHDF2和真核翻译延伸因子1α-1, 促进mRNA翻译 | [30] | ||
NSUN5 | 28S rRNA | 维持三级复合物rRNA-tRNA-mRNA的结构稳定性,调节蛋白质合成 | [10,31] | |
mRNA | 维持mRNA翻译和稳定性,影响翻译效率 | [32-33] | ||
NSUN6 | mRNA | 促进mRNA翻译,可能与翻译终止相关 | [34-35] | |
tRNA | 机制不清 | [36] | ||
NSUN7 | eRNA | 增强eRNA的稳定性 | [37] | |
mRNA | 维持mRNA稳定性 | [38] | ||
DNMT2 | tRNA | 调节tRNA的稳定性和识别临近密码子 | [33⇓-35] | |
mRNA | 在DNA损伤中促进同源重组,RAD52可能作为读码器发挥作用 | [14-15] | ||
消码器 | TET1~3 | mRNA | 羟甲基胞嘧啶有利于mRNA的转录 | [39] |
影响RNA双链的形成 | [40] | |||
tRNA | 促进翻译 | [40] | ||
ALKBH1 | tRNA | 促进线粒体翻译,维持线粒体功能 | [21,28] | |
mRNA | 机制不清 | [21] | ||
读码器 | ALYREF | mRNA | 参与mRNA核胞质穿梭和mRNA核输出 | [11] |
维持mRNA稳定性 | [42] | |||
YBX1 | mRNA | 维持mRNA稳定性 | [23] | |
促进mRNA翻译 | [24] | |||
YTHDF2 | mRNA | 促进mRNA降解 | [22] |
注:m5C:5-甲基胞嘧啶;NSUN:NOL1/NOP2/SUN结构域;DNMT2:DNA甲基转移酶同源物2;TET:甲基胞嘧啶双加氧酶;ALKBH1:α-酮戊二酸依赖性双加氧酶ABH1;ALYREF:Aly/REF输出因子;YBX1:Y-box结合蛋白1;YTHDF2:YTH结构域家族2;rRNA:核糖体RNA;tRNA:转运RNA;mt-tRNA:线粒体转运RNA;miRNA:微小RNA;lncRNA:长链非编码RNA;eRNA:增强子RNA |
表2 m5C RNA甲基化相关酶对肾脏疾病的作用及其机制 |
肾脏疾病或模型 | 酶 | 作用及机制 | 参考文献 |
---|---|---|---|
缺血再灌注诱导的AKI | TET2↓ | 抑制炎症,起保护作用 | [49] |
缺血再灌注诱导的AKI | TET1/TET2↓ | 影响启动子去甲基化,调控基因的表达 | [50] |
缺血再灌注/顺铂/肾移植/脓毒症诱导的AKI | TET2↓ | 通过PPAR信号通路调节代谢和炎症反应,起保护作用 | [51] |
缺血再灌注诱导的AKI | TET3↓ | 肼苯哒嗪诱导TET3表达,RASAL1启动子去甲基化,减轻纤维化 | [52] |
肝纤维化相关AKI | YBX1↓ | YBX1与CXCL1启动子结合,抑制CXCL1转录 | [53] |
钙调神经磷酸酶抑制剂肾毒性 | YBX1↑ | 蛋白激酶B/细胞外调节蛋白激酶催化YBX1在Ser102位点的磷酸化,YBX1稳定COL1A mRNA,促进纤维化 | [54] |
CKD | YBX1 | YBX1与TGF-β1 mRNA 5’非编码区结合,促进TGF-β1表达 | [55] |
CKD | YBX1 | 反式激活MMP-2,上调MMP-2转录,活化肾小球系膜细胞 | [56] |
UUO | YBX1↑ | YBX1与IHG-1结合,促进TRAP1降解 | [57] |
UUO | 胞质YBX1↑ | 稳定COL1A1 mRNA,促进纤维化,HSc025增加YBX1核移位,抑制COL1A1转录 | [58] |
UUO | YBX1↑ | 在单核细胞中,YBX1调节IL-10等抗炎细胞因子 | [60] |
UUO | TET2↑ | HIF-1α上调,触发代谢重塑,TET2上调,α-平滑肌肌动蛋白启动子去甲基化,促进纤维化 | [63] |
UUO | TET3↓ | RASAL1启动子高甲基化,RASAL1下调,促进纤维化,BMP7可上调TET3 | [65] |
UUO | TET3 | 基于CRISPR/Cas9的基因特异性双加氧酶,靶向激活RASAL1和Klotho,减轻纤维化 | [66] |
DKD | TET1↓ | 上游激活蛋白1抑制TET1,TET1促进核因子E2相关因子2转录 | [61] |
DKD | TET1/TET3↓ | 肥胖和糖尿病在雌性小鼠中负向调节肾小球TET家族蛋白表达 | [62] |
DKD | TET2↑ | 通过DNA去甲基化上调TGFβ1,促进DKD | [64] |
DKD | YBX1↓ | miR-216a靶向YBX1,YBX1下调导致Tsc-22上调,促进COL1A2表达 | [59] |
注:AKI:急性肾损伤;CKD:慢性肾脏病;UUO:单侧输尿管梗阻;DKD:糖尿病肾病;PPAR:过氧化物酶体增殖物激活受体;TGF-β1:转化生长因子-β1;MMP-2:基质金属蛋白酶-2;IHG-1:高糖诱导蛋白-1;IL-10:白细胞介素-10;HIF-1α:缺氧诱导因子-1α;BMP7:骨形态蛋白7;CRISPR/Cas9:成簇规律间隔短回文重复序列及其相关蛋白9 |
表3 m5C RNA甲基化临床转化诊断潜能 |
表4 m5C RNA甲基化临床转化治疗潜能 |
动物模型 | 干预 | 方式 | 剂量及疗程 | 作用 | 参考文献 |
---|---|---|---|---|---|
AKI | 肼苯哒嗪诱导TET3表达 | 腹腔注射 | 5 mg/kg,隔日1次 | 缓解AKI向CKD进展 | [52] |
UUO | YBX1敲减 | 缓解肾小管间质损伤及肾脏纤维化 | [58] | ||
UUO | HSc025诱导YBX1核穿梭 | 腹腔注射 | 75 mg/kg,UUO术后1 h、1 d和3 d | 缓解肾脏纤维化 | [58] |
UUO | 基于CRISPR/ cas9的基因特异性双加氧酶 | 输尿管注射 | 108 TU/80 μL,UUO术中单次 | 缓解肾脏纤维化 | [66] |
DKD | 过表达TET1 | 血糖、血尿素氮和血肌酐下降,缓解DKD进展 | [61] | ||
DKD | PJ-34抑制TET2表达 | 口服 | 30 mg/kg,每日1次 | 缓解DKD进展 | [64] |
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