Intracellular Single Strand DNA and High-Throughput Analysis Techniques

Ruiqi Li; Weiyi Lai; Hailin Wang

doi:10.7536/PC240304

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Prog Chem ›› 2024, Vol. 36 ›› Issue (9) : 1283-1290. DOI: 10.7536/PC240304

Review

Intracellular Single Strand DNA and High-Throughput Analysis Techniques

Ruiqi Li ¹^,² ,
Weiyi Lai ¹^,^* ,
Hailin Wang ¹^,²

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Abstract

During many life processes such as replication,transcription,double-strand breaks repair and so on,double-stranded DNA will temporarily unwind and form single strand DNA(ssDNA).ssDNA may affect genomic stability and may also participate in the formation of non-B DNA structure,which in turn regulates and influences many key cellular processes.This review briefly describes the causes of the formation of single-stranded DNA,the structures containing single-stranded DNA and their possible functions in cells,and summarizes some high-throughput analysis techniques of single-stranded DNA,which provides the method inspiration for the subsequent ssDNA research and promotes the further development of ssDNA analysis techniques and methods。

Contents

1 Overview of ssDNA

2 Formation and function of ssDNA

3 ssDNA sequencing methods

3.1 ssDNA-seq

3.2 KAS-seq

3.3 DRIP-seq

3.4 R-ChIP

3.5 SMRF-seq

3.6 MapR

3.7 G4 ChIP-seq

3.8 G4 CUT&Tag

4 Conclusion and outlook

Key words

single strand DNA / R-loop / G-quadruplex / high-throughput sequencing

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Ruiqi Li , Weiyi Lai , Hailin Wang. Intracellular Single Strand DNA and High-Throughput Analysis Techniques[J]. Progress in Chemistry. 2024, 36(9): 1283-1290 https://doi.org/10.7536/PC240304

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