Research Status of Bacterial Degradation of Pesticide Residues in Soybean

WANGHaoyi, QIAOWei, LINYuying, YANGHaobo, JIEWeiguang

Chin Agric Sci Bull ›› 2025, Vol. 41 ›› Issue (6) : 126-131.

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Chin Agric Sci Bull ›› 2025, Vol. 41 ›› Issue (6) : 126-131. DOI: 10.11924/j.issn.1000-6850.casb2024-0589

Research Status of Bacterial Degradation of Pesticide Residues in Soybean

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Abstract

This study comprehensively reviews the recent research on bacterial degradation of pesticide residues both domestically and internationally, enumerates the common bacteria for degrading pesticide residues in soybeans, conducts an in-depth analysis of the pathways and mechanisms of bacterial degradation of common pesticide residues in soybeans, and deliberates on the impacts of pesticide structure, the intrinsic mechanism of bacteria, and environmental factors on the bacterial degradation of pesticide residues in soybeans. In light of the issues such as soil and crop pollution caused by excessive pesticide use, which adversely affect human health and the ecological environment, the degradation function of bacteria on pesticides can be utilized for improvement, thereby enhancing crop yield and facilitating sustainable agricultural development. It is proposed that the further exploration of bacterial species capable of degrading pesticide residues in soybeans and the strategy of combining bacterial strains in the future should be pursued, with the aim of enhancing soybean yield and quality, reducing the harm of pesticide residues to human health, and providing a reference for ecological protection.

Key words

soybean / bacteria / pesticide residues / degradation pathway and mechanism / influence factor / sustainable agricultural development

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WANG Haoyi , QIAO Wei , LIN Yuying , et al . Research Status of Bacterial Degradation of Pesticide Residues in Soybean[J]. Chinese Agricultural Science Bulletin. 2025, 41(6): 126-131 https://doi.org/10.11924/j.issn.1000-6850.casb2024-0589

References

[1]
师高民. 五谷,起源考之三;大豆和玉米[J]. 中国粮食经济, 2021, 1:76.
[2]
WAHAB S, MUZAMMIL K, NASIR N, et al. Advancement and new trends in analysis of pesticide residues in food: a comprehensive review[J]. Plants, 2022, 11(9):1106.
[3]
CHANDRASEKARAN M, PARAMASIVAN M. Plant growth-promoting bacterial (PGPB) mediated degradation of hazardous pesticides: a review[J]. International biodeterioration & biodegradation, 2024, 190:105769.
[4]
KAUR R, SINGH D, KUMARI A, et al. Pesticide residues degradation strategies in soil and water: a review[J]. International journal of environmental science and technology, 2021, 20:1-24.
[5]
GAANGOLA S, SHARMA A, JOSHI S, et al. Novel mechanism and degradation kinetics of pesticides mixture using Bacillus sp. strain 3C in contaminated sites[J]. Pesticide biochemistry and physiology, 2022, 181:104996.
[6]
ROY T, BANDOPADHYAY A, PAUL C, et al. Role of plasmid in pesticide degradation and metal tolerance in two plant growth-promoting rhizobacteria Bacillus cereus (NCIM 5557) and Bacillus safensis (NCIM 5558)[J]. Current microbiology, 2022, 79(4):106.
[7]
OMEIRI M, KHNAYZER R, YUESF H, et al. Bacillus spp. isolated from soil in lebanon can simultaneously degrade methomyl in contaminated soils and enhance plant growth[J]. Biocatalysis and agricultural biotechnology, 2022, 39:102280.
[8]
AHMAD S, PINTO A P, HAI F I, et al. Dimethoate residues in Pakistan and mitigation strategies through microbial degradation: a review[J]. Environmental science and pollution research, 2022, 29(34):51367-51383.
[9]
GILANI R A, RAFIQUE M, REHMAN A, et al. Biodegradation of chlorpyrifos by bacterial genus Pseudomonas[J]. Journal of basic microbiology, 2016, 56(2):105-119.
[10]
GONG T, XU X, DANG Y, et al. An engineered Pseudomonas putida can simultaneously degrade organophosphates, pyrethroids and carbamates[J]. Science of the total environment, 2018, 628:1258-1265.
[11]
ZHANG Q, LI S, MA C, et al. Simultaneous biodegradation of bifenthrin and chlorpyrifos by Pseudomonas sp. CB2[J]. Journal of environmental science and health, part b, 2018, 53(5):304-312.
[12]
JARIYAL M, GUPTA V K, MANDAL K, et al. Brevibacterium frigoritolerans as a novel organism for the bioremediation of phorate[J]. Bulletin of environmental contamination and toxicology, 2015, 95:680-686.
[13]
CHEN S, DONG Y H, CHANG C, et al. Characterization of a novel cyfluthrin-degrading bacterial strain Brevibacterium aureum and its biochemical degradation pathway[J]. Bioresource technology, 2013, 132:16-23.
[14]
XU Z, LI B, JIA Y, et al. Biodegradation of imazethapyr by bacterial strain IM9601 isolated from agricultural soil[J]. Current microbiology, 2024, 81(1):33.
[15]
ELSHIKH M S, ALARJANI K M, HUESSIEN D S, et al. Enhanced biodegradation of chlorpyrifos by Bacillus cereus CP6 and Klebsiella pneumoniae CP19 from municipal waste water[J]. Environmental research, 2022, 205:112438.
[16]
杨昊博, 接伟光, 林厚泽, 等. 微生物降解大豆农药残留研究现状[J]. 粮食与油脂, 2023, 36(5):13-18.
[17]
SHARMA R, SAROOP S. Role of microbes in pesticide bioremediation: recent advances and biotechnological implications[J]. Pesticides in a changing environment, 2024, 350:223-250.
[18]
何霞, 白红娟. 微生物降解有机磷农药残留的研究进展[J]. 山西化工, 2011, 31(4):27-29.
[19]
BOUTEH E, AHMADI N, ABBASI M, et al. Biodegradation of organophosphorus pesticides in moving bed biofilm reactors: Analysis of microbial community and biodegradation pathways[J]. Journal of hazardous materials, 2021, 408:124950.
[20]
BIBI H, MAHMOOD S, KHALID A, et al. Isolation of bacterial strains for efficient degradation of organophosphate pesticide[J]. Soil & environment, 2023, 42(1):89.
[21]
YASMIN A, AMBREEN S, SHABIR S. Biotransformation of dimethoate into novel metabolites by bacterial isolate Pseudomonas kilonensis MB490[J]. Journal of environmental science and health, part b., 2022, 57(1):13-22.
[22]
WU X, CHEN W J, LIN Z, et al. Rapid biodegradation of the organophosphorus insecticide acephate by a novel strain Burkholderia sp. A11 and its impact on the structure of the indigenous microbial community[J]. Journal of agricultural and food chemistry, 2023, 71(13):5261-5274.
[23]
MUSTAPHA M U, HALIMOON N, JOHAR W L W, et al. An overview on biodegradation of carbamate pesticides by soil bacteria[J]. Pertanika journal of science & technology, 2019, 27(2):547-563.
[24]
MISHRA S, PANG S, ZHANG W, et al. Insights into the microbial degradation and biochemical mechanisms of carbamates[J]. Chemosphere, 2021, 279:130500.
[25]
MISHAR S, ZHANG W, LIN Z, et al. Carbofuran toxicity and its microbial degradation in contaminated environments[J]. Chemosphere, 2020, 259:127419.
[26]
MALHOTRA H, KAUR S, PHALE P S. Conserved metabolic and evolutionary themes in microbial degradation of carbamate pesticides[J]. Frontiers in microbiology, 2021, 12:648868.
[27]
CHANIKA E, GEORGIADOU D, SOUERRF E, et al. Isolation of soil bacteria able to hydrolyze both organophosphate and carbamate pesticides[J]. Bioresource technology, 2011, 102(3):3184-3192.
Two bacteria identified as Pseudomonas putida and Acinetobacter rhizosphaerae able to rapidly degrade the organophosphate (OP) fenamiphos (FEN) were isolated. Denaturating gradient gel electrophoresis analysis revealed that the two isolates were dominant members of the enrichment culture. Clone libraries further showed that bacteria belonging to α-, β-, γ-proteobacteria and Bacteroidetes were also present in the final enrichment but were not isolated. Both strains hydrolyzed FEN to fenamiphos phenol which was further transformed, only by P. putida. The two strains were using FEN as C and N source. Cross-feeding studies with other pesticides showed that P. putida degraded OPs with a P-O-C linkage and unexpectedly degraded the carbamates oxamyl and carbofuran being the first wild-type bacterial strain able to degrade both OPs and carbamates. The same isolate exhibited high bioremediation potential against spillage-level concentrations of aged residues of FEN and its oxidized derivatives.Copyright © 2010 Elsevier Ltd. All rights reserved.
[28]
BIROLLI W G, ALVARENGA N, SELEGHIM M H R, et al. Biodegradation of the pyrethroid pesticide esfenvalerate by marine-derived fungi[J]. Marine biotechnology, 2016, 18:511-520.
Esfenvalerate biodegradation by marine-derived fungi is reported here. Esfenvalerate (S,S-fenvalerate) and its main metabolites [3-phenoxybenzaldehyde (PBAld), 3-phenoxybenzoic acid (PBAc), 3-phenoxybenzyl alcohol (PBAlc), and 2-(4-chlorophenyl)-3-methylbutyric acid (CLAc)] were quantitatively analyzed by a validated method in triplicate experiments. All the strains (Penicillium raistrickii CBMAI 931, Aspergillus sydowii CBMAI 935, Cladosporium sp. CBMAI 1237, Microsphaeropsis sp. CBMAI 1675, Acremonium sp. CBMAI 1676, Westerdykella sp. CBMAI 1679, and Cladosporium sp. CBMAI 1678) were able to degrade esfenvalerate, however, with different efficiencies. Initially, 100 mg L(-1) esfenvalerate (Sumidan 150SC) was added to each culture in 3 % malt liquid medium. Residual esfenvalerate (64.8-95.2 mg L(-1)) and the concentrations of PBAc (0.5-7.4 mg L(-1)), ClAc (0.1-7.5 mg L(-1)), and PBAlc (0.2 mg L(-1)) were determined after 14 days. In experiments after 7, 14, 21, and 28 days of biodegradation with the three most efficient strains, increasing concentrations of the toxic compounds PBAc (2.7-16.6 mg L(-1), after 28 days) and CLAc (6.6-13.4 mg L(-1), after 28 days) were observed. A biodegradation pathway was proposed, based on HPLC-ToF results. The biodegradation pathway includes PBAld, PBAc, PBAlc, ClAc, 2-hydroxy-2-(3-phenoxyphenyl)acetonitrile, 3-(hydroxyphenoxy)benzoic acid, and methyl 3-phenoxy benzoate. Marine-derived fungi were able to biodegrade esfenvalerate in a commercial formulation and showed their potential for future bioremediation studies in contaminated soils and water bodies.
[29]
GAJENDIRAN A, ABRAHAM J. An overview of pyrethroid insecticides[J]. Frontiers in biology, 2018, 13:79-90.
[30]
CHEN S H, ZHAN H. Biodegradation of synthetic pyrethroid insecticides[J]. Microbial metabolism of xenobiotic compounds, 2019, DOI:10.1007/978-981-13-7462-3_11.
[31]
ZHANG M, YANG K, YANG L, et al. A novel cold-adapted pyrethroid-degrading esterase from Bacillus subtilis J6 and its application for pyrethroid-residual alleviation in food matrix[J]. Journal of hazardous materials, 2024, 463:132847.
[32]
HUANG Y, CHEN S F, CHEN W J, et al. Efficient biodegradation of multiple pyrethroid pesticides by Rhodococcus pyridinivorans strain Y6 and its degradation mechanism[J]. Chemical engineering journal, 2023, 469:143863.
[33]
PANG S, LIN Z, ZHANG W, et al. Insights into the microbial degradation and biochemical mechanisms of neonicotinoids[J]. Front microbiol., 2020, 11:868.
Neonicotinoids are derivatives of synthetic nicotinoids with better insecticidal capabilities, including imidacloprid, nitenpyram, acetamiprid, thiacloprid, thiamethoxam, clothianidin, and dinotefuran. These are mainly used to control harmful insects and pests to protect crops. Their main targets are nicotinic acetylcholine receptors. In the past two decades, the environmental residues of neonicotinoids have enormously increased due to large-scale applications. More and more neonicotinoids remain in the environment and pose severe toxicity to humans and animals. An increase in toxicological and hazardous pollution due to the introduction of neonicotinoids into the environment causes problems; thus, the systematic remediation of neonicotinoids is essential and in demand. Various technologies have been developed to remove insecticidal residues from soil and water environments. Compared with non-bioremediation methods, bioremediation is a cost-effective and eco-friendly approach for the treatment of pesticide-polluted environments. Certain neonicotinoid-degrading microorganisms, including,,,,,, and, have been isolated and characterized. These microbes can degrade neonicotinoids under laboratory and field conditions. The microbial degradation pathways of neonicotinoids and the fate of several metabolites have been investigated in the literature. In addition, the neonicotinoid-degrading enzymes and the correlated genes in organisms have been explored. However, few reviews have focused on the neonicotinoid-degrading microorganisms along with metabolic pathways and degradation mechanisms. Therefore, this review aimed to summarize the microbial degradation and biochemical mechanisms of neonicotinoids. The potentials of neonicotinoid-degrading microbes for the bioremediation of contaminated sites were also discussed.Copyright © 2020 Pang, Lin, Zhang, Mishra, Bhatt and Chen.
[34]
JESCHKE P, NAUEN R, SCHINDLER M, et al. Overview of the status and global strategy for neonicotinoids[J]. Agric food chem., 2011, 59:2897-2908.
[35]
ZHANG X, HUANG Y, CHEN W J, et al. Environmental occurrence, toxicity concerns and biodegradation of neonicotinoid insecticides[J]. Environmental research, 2023, 218:114953.
[36]
HUSSAIN S, HARYLEY C J, SHETTIGAR M, et al. Bacterial biodegradation of neonicotinoid pesticides in soil and water systems[J]. Microbiology letters, 2016, 363(23):252.
[37]
WANG G, YUE W, LIU Y, et al. Biodegradation of the neonicotinoid insecticide acetamiprid by bacterium Pigmentiphaga sp. strain AAP-1 isolated from soil[J]. Bioresource technology, 2013, 138:359-368.
[38]
林厚泽, 接伟光, 杨冬莹. 大豆农药残留及降解方法研究现状[J]. 粮食与油脂, 2022, 35(6):8-12.
[39]
LIN Z, PANG S, ZHOU Z, et al. Current insights into the microbial degradation for butachlor: strains, metabolic pathways, and molecular mechanisms[J]. Applied microbiology and biotechnology, 2021, 105(11):4369-4381.
[40]
SALAM M T B, MAHMOOD A, ASGHAR W, et al. Phytomicrobiomes: a potential approach for sustainable pesticide biodegradation[J]. Applied sciences, 2024, 14(7):2740.
[41]
ZHONG J, WU S, CHEN W J, et al. Current insights into the microbial degradation of nicosulfuron: strains, metabolic pathways, and molecular mechanisms[J]. Chemosphere, 2023, 326:138390.
[42]
ZHANG J, YIN J G, HANG B J, et al. Cloning of a novel arylamidase gene from Paracoccus sp. strain FLN-7 that hydrolyzes amide pesticides[J]. Applied and environmental microbiology, 2012, 78(14):4848-4855.
[43]
GIRI B S, GEED S, VIKRANT K, et al. Progress in bioremediation of pesticide residues in the environment[J]. Environmental engineering research, 2021, 26(6):200446.
[44]
RANDIKA J, BANDARA P, SOYSA H S M, et al. Bioremediation of pesticide-contaminated soil: a review on indispensable role of soil bacteria[J]. Journal of agricultural sciences (sri lanka), 2022, 17(1):19-43.
[45]
BOSE S, KUMAR P S, VO D V N, et al. Microbial degradation of recalcitrant pesticides: a review[J]. Environmental chemistry letters, 2021, 19: 3209-3228.
[46]
ZHENG Y Y, HUI X C, GUO H Z, et al. Research progress on microbial degradation of pesticide residues based on bacterial biofilm[J]. Chinese journal of pesticide science, 2024, 26(4):692-702.
[47]
王馨芳, 郑卫刚, 寇志安, 等. 三唑类农药的微生物降解研究进展[J]. 寒旱农业科学, 2023, 2(10):909-916.
[48]
HUANG Y, XIAO L, LI F, et al. Microbial degradation of pesticide residues and an emphasis on the degradation of cypermethrin and 3-phenoxy benzoic acid: a review[J]. Molecules, 2018, 23(9):2313.
[49]
MENG X, GUO Y, WANG Y, et al. A systematic review of photolysis and hydrolysis degradation modes, degradation mechanisms, and identification methods of pesticides[J]. Journal of chemistry, 2022, 1:9552466.
[50]
DAS N. Removal of atrazine from aqueous environment using immobilized Pichia kudriavzevii Atz-EN-01 by two different methods[J]. International biodeterioration & biodegradation, 2015, 104:53-58.
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