PDF(3426 KB)
Structural Characteristics of Rhizosphere Soil Microbial Communities in Wild Dendrobium denneanum with Different Growth Years
PENGCuixian, WANGCan, YANGYuling, LILing, LIGuilin, SUNHongwei, TAOYonghong
Chin Agric Sci Bull ›› 2026, Vol. 42 ›› Issue (7) : 130-140.
PDF(3426 KB)
Abbreviation (ISO4): Chin Agric Sci Bull
Editor in chief: Yulong YIN
PDF(3426 KB)
Structural Characteristics of Rhizosphere Soil Microbial Communities in Wild Dendrobium denneanum with Different Growth Years
The paper aims to address the current issues of growth age and rhizosphere soil community structure of wild Dendrobium denneanum. To explore the microbial community structure of rhizosphere soil of D. denneanum with different growth years, and the correlation between microbial community and effective components of medicinal materials and soil nutrients, four soil samples were set up, including the control group of untreated soil without D. denneanum (XCK), and the rhizosphere soil of D. denneanum grown for 2 years (A2), 3 years (A3), and 4 years (A4). High-throughput sequencing was used to analyze the microbial community structure, while the contents of polysaccharides, phenols, extracts of D. denneanum and soil nutrients were determined. The results showed that with the extension of D. denneanum growth years, the richness and diversity of rhizosphere soil bacteria first decreased and then increased, whereas those of fungi first increased and then decreased. At the phylum level of bacteria, Proteobacteria had the highest relative abundance, with the proportion in A3 reaching 59.3%, which was the highest among all groups; followed by Bacteroidota which was most abundant in A4 (42.6%), and Acidobacteriota which was most abundant in XCK (11.9%). For fungi, Mortierellomycota was the dominant phylum, with the highest proportion in A2 (58.1%); Ascomycota was most abundant in XCK (52.9%); and Basidiomycota had the highest relative abundance in A3 (17.3%). Correlation analysis indicated that soil organic matter, humus, total phosphorus, total nitrogen, and calcium were significantly correlated with the rhizosphere soil microbial community of D. denneanum. Meanwhile, fungal genera such as Mortierella, Trichoderma, Ilyonectria were significantly positively correlated with some effective components of D. denneanum. In conclusion, the growth years of D. denneanum had a significant impact on the species composition and diversity of its rhizosphere soil microbial community.
Dendrobium denneanum / growth years / rhizosphere microorganisms / community structure / soil nutrients / active ingredients
| [1] |
祝蕾, 严辉, 刘培, 等. 药用植物根际微生物对其品质形成的影响及其作用机制的研究进展[J]. 中草药, 2021, 52(13):4064-4073.
|
| [2] |
马晓晶, 郭娟, 唐金富, 等. 论中药资源可持续发展的现状与未来[J]. 中国中药杂志, 2015, 40(10):1887-1892.
|
| [3] |
杨毅, 田侃, 倪新兴, 等. 中药材品质影响因素实证研究[J]. 中药材, 2016, 39(6):1251-1256.
|
| [4] |
国家药典委员会. 中华人民共和国药典:2015年版一部[M]. 北京: 中国医药科技出版社, 2015:282-283.
|
| [5] |
四川省食品药品监督管理局. 四川省中药材标准[M]. 成都: 四川科学技术出版社, 2010:414-418.
|
| [6] |
四川省食品药品监督管理局. 四川省中药饮片炮制规范[M]. 成都: 四川科学技术出版社, 2016:375-376.
|
| [7] |
薛倩倩, 尹显梅, 尹鸿翔, 等. 叠鞘石斛多糖抗氧化作用研究[J]. 科学技术与工程, 2015, 15(12):153-156.
|
| [8] |
范益军, 淳泽, 罗傲雪, 等. 迭鞘石斛中性多糖DDP1-1的体内免疫活性[J]. 应用与环境生物学报, 2010, 16(3):376-379.
|
| [9] |
Plant rhizospheres encompass a dynamic zone of interactions between microorganisms and their respective plant hosts. For decades, researchers have worked to understand how these complex interactions influence different aspects of plant growth, development, and evolution. Studies of plant-microbial interactions in the root zone have typically focused on the effect of single microbial species or strains on a plant host. These studies, however, provide only a snapshot of the complex interactions that occur in the rhizosphere, leaving researchers with a limited understanding of how the complex microbiome influences the biology of the plant host. To better understand how rhizosphere interactions influence plant growth and development, novel frameworks and research methodologies could be implemented. In this perspective, we propose applying concepts in evolutionary biology to microbiome experiments for improved understanding of group-to-group and community-level microbial interactions influencing soil nutrient cycling. We also put forth simple experimental designs utilizing -omics techniques that can reveal important changes in the rhizosphere impacting the plant host. A greater focus on the components of complexity of the microbiome and how these impact plant host biology could yield more insight into previously unexplored aspects of host-microbe biology relevant to crop production and protection.
|
| [10] |
Microbial communities play a pivotal role in the functioning of plants by influencing their physiology and development. While many members of the rhizosphere microbiome are beneficial to plant growth, also plant pathogenic microorganisms colonize the rhizosphere striving to break through the protective microbial shield and to overcome the innate plant defense mechanisms in order to cause disease. A third group of microorganisms that can be found in the rhizosphere are the true and opportunistic human pathogenic bacteria, which can be carried on or in plant tissue and may cause disease when introduced into debilitated humans. Although the importance of the rhizosphere microbiome for plant growth has been widely recognized, for the vast majority of rhizosphere microorganisms no knowledge exists. To enhance plant growth and health, it is essential to know which microorganism is present in the rhizosphere microbiome and what they are doing. Here, we review the main functions of rhizosphere microorganisms and how they impact on health and disease. We discuss the mechanisms involved in the multitrophic interactions and chemical dialogues that occur in the rhizosphere. Finally, we highlight several strategies to redirect or reshape the rhizosphere microbiome in favor of microorganisms that are beneficial to plant growth and health. © 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.
|
| [11] |
Plants host distinct microbial communities on and inside their tissues designated the plant microbiota. Microbial community profiling enabled the description of the phylogenetic structure of the plant microbiota to an unprecedented depth, whereas functional insights are largely derived from experiments using individual microorganisms. The binary interplay between isolated members of the plant microbiota and host plants ranges from mutualistic to commensalistic and pathogenic relationships. However, how entire microbial communities capable of executing both growth-promoting and growth-compromising activities interfere with plant fitness remains largely unknown. Ultimately, unravelling the net result of microbial activities encoded in the extended plant genome-the plant microbiome-will be key to understanding and exploiting the full yield potential of a crop plant. In this perspective, we summarize first achievements of plant-microbiome research, we discuss future research directions, and we provide ideas for the translation of basic science to application to capitalize on the plant microbiome at work.
|
| [12] |
李熙英, 金海强, 贾斌. 不同生长年限人参地土壤微生物多样性研究初报[J]. 延边大学农学学报, 2011, 33(2):133-136.
|
| [13] |
|
| [14] |
母茂君, 张弟桂, 张华, 等. 太白贝母根际微生物分布与生物碱含量的相关性[J]. 中国中药杂志, 2019, 44(11):2231-2235.
|
| [15] |
唐彬彬, 董姚君, 贺密密, 等. 云南文山健康三七种植年限对根际微生物群落的影响[J]. 微生物学通报, 2020, 47(9):2857-2866.
|
| [16] |
张媛媛, 张彬. 苯酚-硫酸法与蒽酮-硫酸法测定绿茶茶多糖的比较研究[J]. 食品科学, 2016, 37(4):158-163.
对苯酚-硫酸法和蒽酮-硫酸法在茶多糖测定中的差异进行比较,并对苯酚-硫酸法的检测条件进行优化,在单因素试验的基础上,选定苯酚质量分数、硫酸用量、显色时间3 个因素,利用响应面试验考察各因素变化对吸光度的影响。通过优化得到最佳测定条件为4.8%苯酚溶液1 mL、浓硫酸5 mL、显色时间29 min、检测波长488 nm。在此条件下的标准曲线在0~0.2 mg/mL范围内呈良好线性关系。该方法对3 种样品的加标回收率均不小于97.55%,重复性实验相对标准偏差为1.82%,说明此方法准确可靠、稳定性高,适合于茶多糖的测定。
|
| [17] |
鲍士旦. 土壤农化分析[M]. 北京: 中国农业出版社, 2000:11-23.
|
| [18] |
谭勇, 崔尹赡, 季秀玲, 等. 三七连作的根际、根内微生物变化与生态学研究进展[J]. 中草药, 2017, 48(2):391-399.
|
| [19] |
|
| [20] |
于春雷, 高嵩, 孙文松. 连作对辽细辛土壤理化性质和根际微生物群落特征的影响[J]. 江苏农业科学, 2022, 50(14):250-258.
|
| [21] |
王光华, 刘俊杰, 于镇华, 等. 土壤酸杆菌门细菌生态学研究进展[J]. 生物技术通报, 2016, 32(2):14-20.
酸杆菌是土壤中一类重要的细菌类群。基于16S rRNA基因序列分析发现,酸杆菌一般占细菌总量的20%左右,甚至高达50%以上,表明酸杆菌在土壤生态过程中起到重要的作用。从植被、海拔高度、氮肥管理及二氧化碳升高对土壤酸杆菌分布的影响,以及酸杆菌根际效应等几方面论述了土壤酸杆菌门细菌生态学研究进展;综合分析揭示出不同分类单元酸杆菌细菌分布与环境因子间的关系;阐述了部分酸杆菌细菌的潜在生态功能。最后指出在土壤酸杆菌研究中应强化分离培养、细化分子生态、采用宏基因组学和单细胞测序新技术的重要性。
|
| [22] |
丛微, 喻海茫, 于晶晶, 等. 人参种植对林地土壤细菌群落结构和代谢功能的影响[J]. 生态学报, 2021, 41(1):162-171.
|
| [23] |
The population diversity of cultured isolates of the phylum Bacteroidetes was investigated from salt-marsh sediments. A total of 44 isolates that belonged to this phylum were isolated either from high-dilution plates or from end-dilution most-probable-number (MPN) tubes. The majority of the isolates came from Virginia, with others isolated from salt marshes in Delaware and North Carolina. All the isolates were aerobic Gram-negative, catalase positive small rods that formed uniform colonies; most had either yellow or orange pigmentation. Riboprinting of 40 isolates revealed they were genotypically diverse, consisting of 33 different riboprint patterns; there were four riboprint groups with two or more members. The isolates could be divided into 23 different fatty acid methyl ester (FAME) profiles at the species level with 14 of the profiles being unique to single isolates. One group of 10 isolates was closely related, suggesting this group may be well adapted for life in salt marshes. Thirteen of the isolates were selected for sequencing of the small-subunit ribosomal RNA gene representing a diverse group of isolates that fell within the classes Sphingobacteria and Flavobacteria. Only one of the isolates was >97% similar at the 16S rDNA to a described species of Cytophaga marinoflava; the other isolates were 94 to 96.5% related to undescribed isolates mostly within the class Flavobacteria. There was good concordance between the FAME dendrogram and a phylogenetic tree based on comparison of 16S sequences. There were no obvious temporal or spatial distribution patterns to the isolates, suggesting that this group of bacteria is inherently diverse.
|
| [24] |
|
| [25] |
张嘉慧, 邢佳佳, 彭丽媛, 等. 丛枝菌根真菌提高感染青枯菌番茄根际土壤细菌群落多样性和稳定性及有益菌属相对丰度[J]. 植物营养与肥料学报, 2023, 29(1):120-131.
|
| [26] |
黄芳芳. 农药对三七根际土壤被孢霉的影响及其田间定殖能力[D]. 昆明: 云南大学, 2017.
|
| [27] |
张英英, 魏玉杰, 吴之涛, 等. 不同种植年限对特殊药材土壤化学性质和微生物多样性的影响[J]. 干旱地区农业研究, 2023, 41(1):150-159.
|
| [28] |
萨如拉, 于淼, 李媛媛, 等. 不同年限玉米秸秆还田对土壤微生物多样性的影响[J]. 中国土壤与肥料, 2023(11):34-40.
|
| [29] |
|
| [30] |
徐腾起. 生物有机肥对向日葵列当寄生的影响及其微生态机理研究[D]. 杨凌: 西北农林科技大学, 2024.
|
| [31] |
Cathaya argyrophylla is an ancient Pinaceae species endemic to China that is listed on the IUCN Red List. Although C. argyrophylla is an ectomycorrhizal plant, the relationship between its rhizospheric soil microbial community and soil properties related to the natural habitat remains unknown. High-throughput sequencing of bacterial 16S rRNA genes and fungal ITS region sequences was used to survey the C. argyrophylla soil community at four natural spatially distributed points in Hunan Province, China, and functional profiles were predicted using PICRUSt2 and FUNGuild. The dominant bacterial phyla included Proteobacteria, Acidobacteria, Actinobacteria, and Chloroflexi, and the dominant genus was Acidothermus. The dominant fungal phyla were Basidiomycota and Ascomycota, while Russula was the dominant genus. Soil properties were the main factors leading to changes in rhizosphere soil bacterial and fungal communities, with nitrogen being the main driver of changes in soil microbial communities. The metabolic capacities of the microbial communities were predicted to identify differences in their functional profiles, including amino acid transport and metabolism, energy production and conversion, and the presence of fungi, including saprotrophs and symbiotrophs. These findings illuminate the soil microbial ecology of C. argyrophylla, and provide a scientific basis for screening rhizosphere microorganisms that are suitable for vegetation restoration and reconstruction for this important threatened species.
|
| [32] |
纳小凡, 郑国琦, 彭励, 等. 不同种植年限宁夏枸杞根际微生物多样性变化[J]. 土壤学报, 2016, 53(1):241-252.
|
| [33] |
范寒雪, 邹世杰, 章圣龙, 等. 嗜冷假单胞菌BYAU-6的分离及低温秸秆降解能力解析[J]. 微生物学报, 2025, 65(8):3273-3286.
|
| [34] |
|
| [35] |
|
| [36] |
谢慧娜. 载体对腈纶废水生化处理过程中微生物群落结构影响[D]. 兰州: 兰州交通大学, 2018.
|
| [37] |
|
| [38] |
巩婷, 温艳华, 陈尔东, 等. 担子菌类真菌新产物研究进展[J]. 菌物研究, 2017, 15(2):89-111.
|
| [39] |
The soil’s rhizosphere is a highly active place where the exchange of substances and information occurs among plants, soils, and microorganisms. The microorganisms involved are crucial to the activities of plant growth and development, metabolism, and reproduction. Fritillaria L. medicinal plants are unique Chinese medicinal ingredients, but the continuous cropping obstacles formed in the artificial planting process is severely harmful to the growth and development of these medicinal plants. In this review, we summarized the current species and distribution of Fritillaria L. in China, and analyzed the changes in microbial diversity (mainly among bacteria and fungi) in the rhizosphere of these plants under long-term continuous cropping. The fungi showed an increasing trend in the soil rhizosphere, resulting in the transition of the soil from the high-fertility “bacterial type” to the low-fertility “fungal type” as planting years increased. Furthermore, the interaction between Fritillaria L. medicinal plants and the rhizosphere microorganisms was reviewed, and promising applications for the rhizosphere microbiome in the cultivation of Fritillaria L. medicinal plants were suggested. It is expected that this review will facilitate the in-depth understanding of rhizosphere microorganisms in the growth, accumulation of active ingredients, and disease control of Fritillaria L.
|
| [40] |
吴林坤, 林向民, 林文雄. 根系分泌物介导下植物-土壤-微生物互作关系研究进展与展望[J]. 植物生态学报, 2014, 38(3):298-310.
根系分泌物是植物与土壤进行物质交换和信息传递的重要载体物质, 是植物响应外界胁迫的重要途径, 是构成植物不同根际微生态特征的关键因素, 也是根际对话的主要调控者。根系分泌物对于生物地球化学循环、根际生态过程调控、植物生长发育等均具有重要功能, 尤其是在调控根际微生态系统结构与功能方面发挥着重要作用, 调节着植物-植物、植物-微生物、微生物-微生物间复杂的互作过程。植物化感作用、作物间套作、生物修复、生物入侵等都是现代农业生态学的研究热点, 它们都涉及十分复杂的根际生物学过程。越来越多的研究表明, 不论是同种植物还是不同种植物之间相互作用的正效应或是负效应, 都是由根系分泌物介导下的植物与特异微生物共同作用的结果。近年来, 随着现代生物技术的不断完善, 有关土壤这一“黑箱”的研究方法与技术取得了长足的进步, 尤其是各种宏组学技术(meta-omics technology), 如环境宏基因组学、宏转录组学、宏蛋白组学、宏代谢组学等的问世, 极大地推进了人们对土壤生物世界的认知, 尤其是对植物地下部生物多样性和功能多样性的深层次剖析, 根际生物学特性的研究成果被广泛运用于指导生产实践。深入系统地研究根系分泌物介导下的植物-土壤-微生物的相互作用方式与机理, 对揭示土壤微生态系统功能、定向调控植物根际生物学过程、促进农业生产可持续发展等具有重要的指导意义。该文综述了根系分泌物的概念、组成及功能, 论述了根系分泌物介导下植物与细菌、真菌、土壤动物群之间的密切关系, 总结了探索根际生物学特性的各种研究技术及其优缺点, 并对该领域未来的研究方向进行了展望。
|
| [41] |
栗圣榕, 谢巧, 廖莉, 等. 叠鞘石斛适宜采收期分析[J]. 中成药, 2020, 42(1):237-242.
|
| [42] |
|
| [43] |
冯璐, 李振凯, 王红, 等. 不同种植年限银柴胡根际土壤微生物群落结构变化[J]. 微生物学通报, 2024, 51(10):4132-4148.
|
| [44] |
|
/
| 〈 |
|
〉 |