Integrated Analysis of Hormone Metabolome and Transcriptome to Reveal Regulatory Mechanism of Blue Light on Tuberous Root Expansion in Tetrastigma hemsleyanum

ZHAOGang, WANGYue, ZHUHai, DUANHuaping, ZHANGLi, LIUPing, WENJing, GUOLianjin

Chin Agric Sci Bull ›› 2026, Vol. 42 ›› Issue (19) : 82-93.

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Chin Agric Sci Bull ›› 2026, Vol. 42 ›› Issue (19) : 82-93. DOI: 10.11924/j.issn.1000-6850.casb2025-0905

Integrated Analysis of Hormone Metabolome and Transcriptome to Reveal Regulatory Mechanism of Blue Light on Tuberous Root Expansion in Tetrastigma hemsleyanum

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Abstract

This study aims to deeply analyze that blue light promotes the expansion and development of tuberous roots of Tetrastigma hemsleyanum by regulating endogenous hormone levels and their signaling pathways. Using the MetWare LC-MS/MS platform, we quantified the changes in the contents of eight major plant hormones, including auxin (IAA), cytokinin (CK), abscisic acid (ABA), jasmonic acid (JA), salicylic acid (SA), gibberellin (GA), ethylene (ETH), and strigolactone (SL), along with their intermediates in T. hemsleyanum tubers before and after blue light treatment. Combined with transcriptome sequencing to analyze differentially expressed genes, we correlated hormonal changes with the differential expression of key genes in their signaling pathways and validated target genes using qPCR, thereby investigating the effects of blue light on tuber development from the perspective of transcriptional regulation and hormonal metabolic synergy. Hormone metabolomics revealed that while IAA levels showed no significant change, the expression of its signaling-related genes was markedly downregulated, indicating that IAA contributes minimally to tuber expansion under blue light. The significant accumulation of zeatin-O-glucoside following blue light treatment may indirectly promote tuber development through sucrose metabolism and starch storage. Furthermore, the decrease in GA20 content and stable expression of GID genes led to the attenuation of gibberellin signaling, potentially exerting a positive regulatory effect on tuber swelling. Additionally, blue light significantly upregulated JA levels while suppressing the expression of ThJAZL2663, a negative regulator of JA signal transduction, suggesting that blue light directly enhances JA physiological activity to promote tuber development. Low-intensity blue light irradiation increases JA content and inhibits the expression of ThJAZL2663 gene, thereby amplifying JA physiological activity and directly promoting development. Moreover, blue light exerts a synergistic effect through differential regulation of the hormonal network, including weakening the gibberellin (GA20-GID) signaling pathway and inducing cytokinin glycosylation metabolism, to facilitate tuber expansion in T. hemsleyanum. This study not only elucidates the impact of blue light-mediated hormonal metabolic changes on tuber development but also provides critical theoretical support for optimizing blue light-regulated supplemental cultivation techniques in T. hemsleyanum.

Key words

phytohormone metabolome / transcriptome / low-intensity blue light / Tetrastigma hemsleyanum / development of tuberous root / correlation and comparative analysis

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ZHAO Gang , WANG Yue , ZHU Hai , et al . Integrated Analysis of Hormone Metabolome and Transcriptome to Reveal Regulatory Mechanism of Blue Light on Tuberous Root Expansion in Tetrastigma hemsleyanum[J]. Chinese Agricultural Science Bulletin. 2026, 42(19): 82-93 https://doi.org/10.11924/j.issn.1000-6850.casb2025-0905

References

[1]
李朝銮. 中国植物志[M]. 北京: 科学出版社,1998:122.
[2]
ZHU R, XU X, YING J, et al. The phytochemistry, pharmacology, and quality control of Tetrastigma hemsleyanum Diels & Gilg in China: A review[J]. Frontiers in pharmacology, 2020, 11:550497.
[3]
胡竹元, 余志怡, 徐斌. 三叶青总黄酮增强三阴性乳腺癌细胞对EGFR-TKI敏感性的机制研究[J]. 中国临床药理学杂志, 2022, 38(8):772-776.
[4]
赵刚, 武思梦, 张悦, 等. 三叶青早期结瘤类基因ThENODL1及ThENODL2的克隆及表达分析[J]. 生命科学研究, 2023, 27(1):23-30.
[5]
张海燕, 段文学, 解备涛, 等. 不同时期干旱胁迫对甘薯块根产量形成及内源激素的影响[A]. //见:山东作物学会2018年学术年会论文集[C]. 济南: 山东省农业科学院,2018:18.
[6]
KRISHNA T P A, MAHARAJAN T, KRISHNA A C S A. Insights into metabolic engineering of bioactive molecules in Tetrastigma hemsleyanum Diels & Gilg: A traditional medicinal herb[J]. Current genomics, 2023, 24(2):72-83.
Plants are a vital source of bioactive molecules for various drug development processes.\nTetrastigma hemsleyanum is one of the endangered medicinal plant species well known to the\nworld due to its wide range of therapeutic effects. Many bioactive molecules have been identified\nfrom this plant, including many classes of secondary metabolites such as flavonoids, phenols, terpenoids,\nsteroids, alkaloids, etc. Due to its slow growth, it usually takes 3-5 years to meet commercial\nmedicinal materials for this plant. Also, T. hemsleyanum contains low amounts of specific bioactive\ncompounds, which are challenging to isolate easily. Currently, scientists are attempting to increase\nbioactive molecules' production from medicinal plants in different ways or to synthesize\nthem chemically. The genomic tools helped to understand medicinal plants' genome organization\nand led to manipulating genes responsible for various biosynthesis pathways. Metabolic engineering\nhas made it possible to enhance the production of secondary metabolites by introducing manipulated\nbiosynthetic pathways to attain high levels of desirable bioactive molecules. Metabolic\nengineering is a promising approach for improving the production of secondary metabolites over a\nshort time period. In this review, we have highlighted the scope of various biotechnological approaches\nfor metabolic engineering to enhance the production of secondary metabolites for pharmaceutical\napplications in T. hemsleyanum. Also, we summarized the progress made in metabolic engineering\nfor bioactive molecule enhancement in T. hemsleyanum. It may lead to reducing the destruction\nof the natural habitat of T. hemsleyanum and conserving them through the cost-effective\nproduction of bioactive molecules in the future.
[7]
孙鹏. 植物激素对甜菜块根增长和糖分积累的调控作用[D]. 呼和浩特: 内蒙古农业大学, 2014.
[8]
杨鑫, 罗兴录, 覃宏宇, 等. 木薯内源激素含量与块根淀粉积累关系研究[J]. 中国农学通报, 2013, 29(33):158-164.
[9]
闻静, 赵刚, 杨玉琪, 等. 三叶青块根发育比较转录组分析[J]. 分子植物育种, 2019, 17(17):5660-5667.
[10]
ZHU S, ZHANG X, REN C, et al. Chromosome-level reference genome of Tetrastigma hemsleyanum (Vitaceae) provides insights into genomic evolution and the biosynthesis of phenylpropanoids and flavonoids[J]. The plant journal, 2023, 114(4):805-823.
Here, we present a high-quality chromosome-scale genome assembly (2.19 Gb) and annotation of Tetrastigma hemsleyanum, a perennial herbaceous liana native to subtropical China with diverse medicinal applications. Approximately 73% of the genome was comprised of transposable elements (TEs), of which long terminal repeat retrotransposons (LTR-RTs) were a predominant group (69% of the genome). The genome size increase of T. hemsleyanum (relative to Vitis species) was mostly due to the proliferation of LTR-RTs. Of the different modes of gene duplication identified, transposed duplication (TRD) and dispersed duplication (DSD) were the predominant ones. Genes, particularly those involved in the phenylpropanoid-flavonoid (PF) pathway and those associated with therapeutic properties and environmental stress resistance, were significantly amplified through recent tandem duplications. We dated the divergence of two intraspecific lineages in Southwest (SW) versus Central-South-East (CSE) China to the late Miocene (approximately 5.2 million years ago). Of those, the former showed more upregulated genes and metabolites. Based on resequencing data of 38 individuals representing both lineages, we identified various candidate genes related to 'response to stimulus' and 'biosynthetic process', including ThFLS11, which is putatively involved in flavonoid accumulation. Overall, this study provides abundant genomic resources for future evolutionary, ecological, and functional genomics studies in T. hemsleyanum and related species.© 2023 Society for Experimental Biology and John Wiley & Sons Ltd.
[11]
ZHAO G, LIU W, ZHU H, et al. The influence of prolonged but low intensity blue light on the physiological properties of root tubers and the accumulation of flavonoids in Tetrastigma hemsleyanum Diels et Gilg[J]. Plant physiology and biochemistry, 2024, 213:108824.
[12]
MISTRY J, CHUGURANSKY S, WILLIAMS L, et al. Pfam: The protein families database in 2021[J]. Nucleic acids research, 2021, 49(D1):D412-D419.
[13]
CONESA A, MADRIGAL P, TARAZONA S, et al. A survey of best practices for RNA-seq data analysis[J]. Genome biology, 2016, 17:13.
RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data analysis, including experimental design, quality control, read alignment, quantification of gene and transcript levels, visualization, differential gene expression, alternative splicing, functional analysis, gene fusion detection and eQTL mapping. We highlight the challenges associated with each step. We discuss the analysis of small RNAs and the integration of RNA-seq with other functional genomics techniques. Finally, we discuss the outlook for novel technologies that are changing the state of the art in transcriptomics.
[14]
闻静, 林国卫, 刘洁, 等. 三叶青早花基因的克隆及其对光质与光周期信号的响应[J]. 分子植物育种, 2023, 21(7):2245-2252.
[15]
LIVAK K J, SCHMITTGEN T D. Analysis of relative gene expression data using real-time quantitative PCR[J]. Methods, 2001, 25(4):402-408.
[16]
杨颜萌, 张家兴, 李亚茹, 等. 光质对黄芩生长与生理生化特征的影响[J]. 应用生态学报, 2024, 35(2):424-430.
冠层光谱组成的差异显著影响着林下植物生长和功能性状的表达。本文采用全光谱、紫外-A(UV-A)辐射、蓝光、绿光、红光等不同LED定制光源对黄芩幼苗进行培养,研究林下药用植物黄芩生长、形态发育、生物量分配、生理特征以及主要次生代谢产物对不同光质的响应特征,旨在探究适合其产量与品质提升的最佳光环境,为林下药用植物资源开发利用提供科学参考。结果表明:与全光谱相比,UV-A显著降低了黄芩株高、地径、叶片厚度和叶面积比,以及各器官生物量;红光显著降低了黄芩地径、生物量、光系统Ⅱ的有效量子产量(Ф<sub>PSⅡ</sub>)及总黄酮浓度;蓝光下黄岑的根长和总生物量显著增加,分别上升了48.0%和10.8%,而叶片数、叶绿素含量显著降低,降幅为20.0%和31.6%,其余主要生理生化性状均与全光谱下响应一致。蓝光在黄芩光合功能维持、生物量积累及次生代谢物合成方面起促进作用,而红光和UV-A在黄芩生理生化代谢过程方面具有明显的抑制作用。因此,黄芩种植可适当增加蓝光的配比,以提高其产量与品质。
[17]
吴思昊. 三叶青块根的发育与成分积累的调控机制研究[D]. 杭州: 浙江农林大学, 2024.
[18]
KOLACHEVSKAYA O O, ALEKSEEVA V V, SERGEEVA L I, et al. Expression of auxin synthesis gene tms1 under control of tuber-specific promoter enhances potato tuberization in vitro[J]. Journal of integrative plant biology, 2015, 57(9):734-744.
[19]
LAVY M, ESTELLE M. Mechanisms of auxin signaling[J]. Development, 2016, 143(18):3226-3229.
The plant hormone auxin triggers complex growth and developmental processes. Its underlying molecular mechanism of action facilitates rapid switching between transcriptional repression and gene activation through the auxin-dependent degradation of transcriptional repressors. The nuclear auxin signaling pathway consists of a small number of core components. However, in most plants each component is represented by a large gene family. The modular construction of the pathway can thus produce diverse transcriptional outputs depending on the cellular and environmental context. Here, and in the accompanying poster, we outline the current model for TIR1/AFB-dependent auxin signaling with an emphasis on recent studies.© 2016. Published by The Company of Biologists Ltd.
[20]
DREHER K A, BROWN J, SAW R E, et al. The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness[J]. The plant cell, 2006, 18(3):699-714.
Rapid, auxin-responsive degradation of multiple auxin/indole-3-acetic acid (Aux/IAA) proteins is essential for plant growth and development. Domain II residues were previously shown to be required for the degradation of several Arabidopsis thaliana Aux/IAA proteins. We examined the degradation of additional full-length family members and the proteolytic importance of N-terminal residues outside domain II using luciferase (LUC) fusions. Elimination of domain I did not affect degradation. However, substituting an Arg for a conserved Lys between domains I and II specifically impaired basal degradation without compromising the auxin-mediated acceleration of degradation. IAA8, IAA9, and IAA28 contain domain II and a conserved Lys, but they were degraded more slowly than previously characterized family members when expressed as LUC fusions, suggesting that sequences outside domain II influence proteolysis. We analyzed the degradation of IAA31, with a region somewhat similar to domain II but without the conserved Lys, and of IAA20, which lacks domain II and the conserved Lys. Both IAA20:LUC and epitope-tagged IAA20 were long-lived, and their longevity was not influenced by auxin. Epitope-tagged IAA31 was long-lived, like IAA20, but by contrast, it showed accelerated degradation in response to auxin. The existence of long-lived and auxin-insensitive Aux/IAA proteins suggeststhat they may play a novel role in auxin signaling.
[21]
WEIJERS D, BENKOVA E, JÄGER K E, et al. Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators[J]. The EMBO Journal, 2005, 24(10):1874-1885.
[22]
ZHOU Y, YAO L, XIE Y, et al. Metabolic and transcriptional analysis of tuber expansion in Curcuma kwangsiensis[J]. Scientific reports, 2025, 15(1):1588.
The tubers of Curcuma kwangsiensis are regarded as an important medicinal material in China. In C. kwangsiensis cultivation, tuber expansion is key to yield and quality, but the regulatory mechanisms are not well understood. In this study, metabolomic and transcriptomic analyses were conducted to elucidate the mechanism underlying tuber expansion development. The results showed that auxin (IAA), jasmonic acid (JA), gibberellin (GA3), ethylene (ETH), and brassinolide (BR) levels increased during tuber expansion development. Metabolomic analysis showed that 197 differentially accumulated metabolites (DAMs) accumulated during tuber expansion development and these also play important roles in the accumulation of carbohydrates and secondary metabolites. 6962 differentially expressed genes (DEGs) were enriched in plant hormone signal transduction, starch and sucrose metabolism, linoleic acid metabolism, MAPK signaling pathway as well as sesquiterpenoid and triterpenoid biosynthesis. Comprehensive analysis revealed that DEGs and DAMs of plant hormone signal transduction, ABC transporters and biosynthesis of phenylpropanoids and terpenoids are critical pathways in regulating tuber expansion. In addition, some transcription factors (ARF, C2H2, C3H, NAC, bHLH, GRAS and WRKY) as well as hub genes (HDS, HMGR, ARF7, PP2CA, PAL and CCOMT) are also involved in this process. This study lays a theoretical basis for the molecular mechanism of tuber expansion in C. kwangsiensis.
[23]
MATHURA S R, SUTTOM F, BOWRIN V. Genome-wide identification, characterization, and expression analysis of the sweet potato (Ipomoea batatas [L.] Lam.) ARF, Aux/IAA, GH3, and SAUR gene families[J]. BMC plant biology, 2023, 23(1):622.
Auxins are known to have roles in the tuberization process in sweet potato (Ipomoea batatas [L.] Lam.) and these effects are mediated by various auxin signalling gene families. In this study, an analysis of the sweet potato genome was performed to identify the ARF, Aux/IAA, GH3, and SAUR auxin signalling gene family members in this crop.A total of 29 ARF, 39 Aux/IAA, 13 GH3, and 200 SAUR sequences were obtained, and their biochemical properties and gene expression profiles were analysed. The sequences were relatively conserved based on exon-intron structure, motif analysis, and phylogenetic tree construction. In silico expression analyses of the genes in fibrous and storage roots indicated that many sequences were not differentially expressed in tuberizing and non-tuberizing roots. However, some ARF, Aux/IAA, and SAUR genes were up-regulated in tuberizing storage roots compared to non-tuberizing fibrous roots while many GH3 genes were down-regulated. Additionally, these genes were expressed in a variety of plant parts, with some genes being highly expressed in shoots, leaves, and stems while others had higher expression in the roots. Some of these genes are up-regulated during the plant's response to various hormone treatments and abiotic stresses. Quantitative RT-PCR confirmation of gene expression was also conducted, and the results were concordant with the in silico analyses. A protein-protein interaction network was predicted for the differentially expressed genes, suggesting that these genes likely form part of a complex regulatory network that controls tuberization. These results confirm those of existing studies that show that auxin signalling genes have numerous roles in sweet potato growth and development.This study provides useful information on the auxin signalling gene families in Ipomoea batatas and suggests putative candidates for further studies on the role of auxin signalling in tuberization and plant development.© 2023. The Author(s).
[24]
XU F, HE S, ZHANG J, et al. Photoactivated CRY1 and phyB interact directly with AUX/IAA proteins to inhibit auxin signaling in Arabidopsis[J]. Molecular plant, 2018, 11(4):523-541.
Light is a key environmental cue that inhibits hypocotyl cell elongation through the blue and red/far-red light photoreceptors cryptochrome- and phytochrome-mediated pathways in Arabidopsis. In contrast, as a pivotal endogenous phytohormone auxin promotes hypocotyl elongation through the auxin receptors TIR1/AFBs-mediated degradation of AUX/IAA proteins (AUX/IAAs). However, the molecular mechanisms underlying the antagonistic interaction of light and auxin signaling remain unclear. Here, we report that light inhibits auxin signaling through stabilization of AUX/IAAs by blue and red light-dependent interactions of cryptochrome 1 (CRY1) and phytochrome B with AUX/IAAs, respectively. Blue light-triggered interactions of CRY1 with AUX/IAAs inhibit the associations of TIR1 with AUX/IAAs, leading to the repression of auxin-induced degradation of these proteins. Our results indicate that photoreceptors share AUX/IAAs with auxin receptors as the same direct downstream signaling components. We propose that antagonistic regulation of AUX/IAA protein stability by photoreceptors and auxin receptors allows plants to balance light and auxin signals to optimize their growth.Copyright © 2017 The Author. Published by Elsevier Inc. All rights reserved.
[25]
SAKAKIBARA H. Cytokinins: Activity, biosynthesis, and translocation[J]. Annual review of plant biology, 2006, 57:431-449.
Cytokinins (CKs) play a crucial role in various phases of plant growth and development, but the basic molecular mechanisms of their biosynthesis and signal transduction only recently became clear. The progress was achieved by identifying a series of key genes encoding enzymes and proteins controlling critical steps in biosynthesis, translocation, and signaling. Basic schemes for CK homeostasis and root/shoot communication at the whole-plant level can now be devised. This review summarizes recent findings on the relationship between CK structural variation and activity, distinct features in CK biosynthesis between higher plants and Agrobacterium infected plants, CK translocation at whole-plant and cellular levels, and CKs as signaling molecules for nutrient status via root-shoot communication.
[26]
CIOĆM, DZIURKA M, PAWŁOWSKA B. Changes in endogenous phytohormones of Gerbera jamesonii axillary shoots multiplied under different light emitting diodes light quality[J]. Molecules, 2022, 27(6):1804.
Light quality is essential in in vitro cultures for morphogenesis process. Light emitting diodes system (LED) allows adjustment as desired and the most appropriate light spectrum. The study analyzed the influence of different LED light quality on the balance of endogenous phytohormones and related compounds (PhRC) in in vitro multiplied axillary shoots of Gerbera jamesonii. Over a duration of 40 days, the shoots were exposed to 100% red light, 100% blue light, red and blue light at a 7:3 ratio with control fluorescent lamps. Every 10 days plant tissues were tested for their PhRC content with the use of an ultra-high performance liquid chromatography (UHPLC). Shoots’ morphometric features were analyzed after a multiplication cycle. We identified 35 PhRC including twelve cytokinins, seven auxins, nine gibberellins, and seven stress-related phytohormones. Compounds content varied from 0.00052 nmol/g to 168.15 nmol/g of dry weight (DW). The most abundant group were stress-related phytohormones (particularly benzoic and salicylic acids), and the least abundant were cytokinins (about 370 times smaller content). LED light did not disturb the endogenous phytohormone balance, and more effectively mitigated the stress experienced by in vitro grown plants than the fluorescent lamps. The stress was most effectively reduced under the red LED. Red and red:blue light lowered tissue auxin levels. Blue LED light lowered the shoot multiplication rate and their height, and induced the highest content of gibberellins at the last stage of the culture.
[27]
MEHDI R, LAMM C E, BODAMPALLI A R, et al. Symplasmic phloem unloading and radial post-phloem transport via vascular rays in tuberous roots of Manihot esculenta[J]. Journal of experimental botany, 2019, 70(20):5559-5573.
Cassava (Manihot esculenta) is one of the most important staple food crops worldwide. Its starchy tuberous roots supply over 800 million people with carbohydrates. Yet, surprisingly little is known about the processes involved in filling of those vital storage organs. A better understanding of cassava carbohydrate allocation and starch storage is key to improving storage root yield. Here, we studied cassava morphology and phloem sap flow from source to sink using transgenic pAtSUC2::GFP plants, the phloem tracers esculin and 5(6)-carboxyfluorescein diacetate, as well as several staining techniques. We show that cassava performs apoplasmic phloem loading in source leaves and symplasmic unloading into phloem parenchyma cells of tuberous roots. We demonstrate that vascular rays play an important role in radial transport from the phloem to xylem parenchyma cells in tuberous roots. Furthermore, enzymatic and proteomic measurements of storage root tissues confirmed high abundance and activity of enzymes involved in the sucrose synthase-mediated pathway and indicated that starch is stored most efficiently in the outer xylem layers of tuberous roots. Our findings form the basis for biotechnological approaches aimed at improved phloem loading and enhanced carbohydrate allocation and storage in order to increase tuberous root yield of cassava.© The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Experimental Biology.
[28]
BURY A E, HELLINGWERF K J. Development of a light-dependent protein histidine kinase[J]. Methods in molecular biology, 2020, 2077:165-180.
Phosphorylation plays a critical role in facilitating signal transduction in prokaryotic and eukaryotic organisms. Our study introduces a tool for investigation of signal diffusion in a biochemical regulation network through the design and characterization of a light-stimulated histidine kinase that consists of the LOV domain from YtvA from Bacillus subtilis and the histidine kinase domain Sln1 from Saccharomyces cerevisiae. We show that blue light can be used as a trigger for modulation of the phosphorylation events in this engineered two-component signal transduction pathway in a eukaryotic cell. At the same time, we demonstrate the robustness of LOV domains and their utility for designing fusion proteins for signal transduction that can be triggered with (blue) light, providing a ready toolkit to design blue light dependent two-component signalling pathways.
[29]
陈笛, 郭永春, 陈雪津, 等. 红蓝光调控茉莉开花的转录组分析[J]. 生物工程学报, 2020, 36(9):1869-1886.
[30]
ZIERER W, RÜSCHER D, SONNEWALD U, et al. Tuber and tuberous root development[J]. Annual review of plant biology, 2021, 72:551-580.
[31]
HAY A, TSIANTIS M. KNOX genes: Versatile regulators of plant development and diversity[J]. Development, 2010, 137(18):3153-3165.
Knotted1-like homeobox (KNOX) proteins are homeodomain transcription factors that maintain an important pluripotent cell population called the shoot apical meristem, which generates the entire above-ground body of vascular plants. KNOX proteins regulate target genes that control hormone homeostasis in the meristem and interact with another subclass of homeodomain proteins called the BELL family. Studies in novel genetic systems, both at the base of the land plant phylogeny and in flowering plants, have uncovered novel roles for KNOX proteins in sculpting plant form and its diversity. Here, we discuss how KNOX proteins influence plant growth and development in a versatile context-dependent manner.
[32]
HAN S, LIU Y, BAO A, et al. OsCSN1 regulates the growth of rice seedlings through the GA signaling pathway in blue light[J]. Journal of plant physiology, 2023, 280:153904.
[33]
WANG Y, DENG D. Molecular basis and evolutionary pattern of GA-GID1-DELLA regulatory module[J]. Molecular & general genetics, 2014, 289(1):1-9.
[34]
YAN B, YANG Z, HE G, et al. The blue light receptor CRY1 interacts with GID1 and DELLA proteins to repress gibberellin signaling and plant growth[J]. Plant communications, 2021, 2(6):100245.
[35]
SHEN Y, FAN K, WANG Y, et al. Red and blue light affect the formation of adventitious roots of tea cuttings (Camellia sinensis) by regulating hormone synthesis and signal transduction pathways of mature leaves[J]. Frontiers in plant science, 2022, 13:943662.
Light is an important environmental factor which affects plant growth, through changes of intensity and quality. In this study, monochromatic white (control), red (660 nm), and blue (430 nm) light-emitting diodes (LEDs) were used to treat tea short cuttings. The results showed the most adventitious roots in blue light treated tea cuttings, but the lowest roots in that treated by red light. In order to explore the molecular mechanism of light quality affecting adventitious root formation, we performed full-length transcriptome and metabolome analyses of mature leaves under three light qualities, and then conducted weighted gene co-expression network analysis (WGCNA). Phytohormone analysis showed that Indole-3-carboxylic acid (ICA), Abscisic acid (ABA), ABA-glucosyl ester (ABA-GE), trans-Zeatin (tZ), and Jasmonic acid (JA) contents in mature leaves under blue light were significantly higher than those under white and red light. A crosstalk regulatory network comprising 23 co-expression modules was successfully constructed. Among them, the “MEblue” module which had a highly positive correlation with ICA (R = 0.92, P = 4e-04). KEGG analysis showed that related genes were significantly enriched in the “Plant hormone signal transduction (ko04075)” pathway. YUC (a flavin-containing monooxygenase), AUX1, AUX/IAA, and ARF were identified as hub genes, and gene expression analysis showed that the expression levels of these hub genes under blue light were higher than those under white and red light. In addition, we also identified 6 auxin transport-related genes, including PIN1, PIN3, PIN4, PILS5, PILS6, and PILS7. Except PILS5, all of these genes showed the highest expression level under blue light. In conclusion, this study elucidated the molecular mechanism of light quality regulating adventitious root formation of tea short cutting through WGCNA analysis, which provided an innovation for “rapid seedling” of tea plants.
[36]
ZHANG P, TANG Y, LIU Y, et al. Metabolic characteristics of self-pollinated wheat seed under red and blue light during early development[J]. Planta, 2023, 258(3):63.
Blue light has a greater effect on jasmonic acid and flavonoid accumulation in wheat seeds than red light; blue light reduces starch synthesis and the size of starch granules and seeds. This study sought to elucidate the effects of blue and red light on seed metabolism to provide important insights regarding the role of light quality in regulating seed growth and development. We used combined multi-omics analysis to investigate the impact of red and blue light (BL) on the induction of secondary metabolite accumulation in the hexaploid wheat Dianmai 3 after pollination. Flavonoids and alkaloids were the most differentially abundant metabolites detected under different treatments. Additionally, we used multi-omics and weighted correlation network analysis to screen multiple candidate genes associated with jasmonic acid (JA) and flavonoids. Expression regulatory networks were constructed based on RNA-sequencing data and their potential binding sites. The results revealed that BL had a greater effect on JA and flavonoid accumulation in wheat seeds than red light. Furthermore, BL reduced starch synthesis and stunted the size of starch granules and seeds. Collectively, these findings clarify the role of BL in the metabolic regulation of early seed development in wheat.© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.
[37]
JEZ J M. Connecting primary and specialized metabolism: Amino acid conjugation of phytohormones by GRETCHEN HAGEN 3 (GH3) acyl acid amido synthetases[J]. Current opinion in plant biology, 2022, 66:102194.
[38]
THINES B, KATSIR L, MELOTTO M, et al. JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling[J]. Nature, 2007, 448:661-665.
[39]
ALONSO M M P, PARRA B S, GARCIA P O, et al. Jasmonic acid-dependent MYC transcription factors bind to a tandem G-Box Motif in the YUCCA8 and YUCCA9 promoters to regulate biotic stress responses[J]. International journal of molecular sciences, 2021, 22(18):9768.
The indole-3-pyruvic acid pathway is the main route for auxin biosynthesis in higher plants. Tryptophan aminotransferases (TAA1/TAR) and members of the YUCCA family of flavin-containing monooxygenases catalyze the conversion of l-tryptophan via indole-3-pyruvic acid to indole-3-acetic acid (IAA). It has been described that jasmonic acid (JA) locally produced in response to mechanical wounding triggers the de novo formation of IAA through the induction of two YUCCA genes, YUC8 and YUC9. Here, we report the direct involvement of a small number of basic helix-loop-helix transcription factors of the MYC family in this process. We show that the JA-mediated regulation of the expression of the YUC8 and YUC9 genes depends on the abundance of MYC2, MYC3, and MYC4. In support of this observation, seedlings of myc knockout mutants displayed a strongly reduced response to JA-mediated IAA formation. Furthermore, transactivation assays provided experimental evidence for the binding of MYC transcription factors to a particular tandem G-box motif abundant in the promoter regions of YUC8 and YUC9, but not in the promoters of the other YUCCA isogenes. Moreover, we demonstrate that plants that constitutively overexpress YUC8 and YUC9 show less damage after spider mite infestation, thereby underlining the role of auxin in plant responses to biotic stress signals.
[40]
LUO L, WANG Y, QIU L, et al. MYC2: A master switch for plant physiological processes and specialized metabolite synthesis[J]. International journal of molecular sciences, 2023, 24(4):3511.
The jasmonic acid (JA) signaling pathway plays important roles in plant defenses, development, and the synthesis of specialized metabolites synthesis. Transcription factor MYC2 is a major regulator of the JA signaling pathway and is involved in the regulation of plant physiological processes and specialized metabolite synthesis. Based on our understanding of the mechanism underlying the regulation of specialized metabolite synthesis in plants by the transcription factor MYC2, the use of synthetic biology approaches to design MYC2-driven chassis cells for the synthesis of specialized metabolites with high medicinal value, such as paclitaxel, vincristine, and artemisinin, seems to be a promising strategy. In this review, the regulatory role of MYC2 in JA signal transduction of plants to biotic and abiotic stresses, plant growth, development and specialized metabolite synthesis is described in detail, which will provide valuable reference for the use of MYC2 molecular switches to regulate plant specialized metabolite biosynthesis.
[41]
CHICO J M, LECHNER E, FERNANDEZ-BARBERO G, et al. CUL3BPM E3 ubiquitin ligases regulate MYC2, MYC3, and MYC4 stability and JA responses[J]. Proceedings of the national academy of sciences, 2020, 117(11):6205-6215.
\n The jasmonate (JA)-pathway regulators MYC2, MYC3, and MYC4 are central nodes in plant signaling networks integrating environmental and developmental signals to fine-tune JA defenses and plant growth. Continuous activation of MYC activity is potentially lethal. Hence, MYCs need to be tightly regulated in order to optimize plant fitness. Among the increasing number of mechanisms regulating MYC activity, protein stability is arising as a major player. However, how the levels of MYC proteins are modulated is still poorly understood. Here, we report that MYC2, MYC3, and MYC4 are targets of BPM (BTB/POZ-MATH) proteins, which act as substrate adaptors of CUL3-based E3 ubiquitin ligases. Reduction of function of CUL3\n BPM\n in\n amiR-bpm\n lines,\n bpm235\n triple mutants, and\n cul3ab\n double mutants enhances MYC2 and MYC3 stability and accumulation and potentiates plant responses to JA such as root-growth inhibition and MYC-regulated gene expression. Moreover, MYC3 polyubiquitination levels are reduced in\n amiR-bpm\n lines. BPM3 protein is stabilized by JA, suggesting a negative feedback regulatory mechanism to control MYC activity, avoiding harmful runaway responses. Our results uncover a layer for JA-pathway regulation by CUL3\n BPM\n -mediated degradation of MYC transcription factors.\n
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